SNP Profiles of IMC 11 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
1._GC-04-029-2-11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
2._GC-04-029-2-11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
3._GC-04-029-2-11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
4._IMC_11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
5._IMC_11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
6._IMC_11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
7._GC-04-029-2-11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
8._GC-04-029-2-11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
9._IMC_11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
10._IMC_11	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
11._RUQ_8	_	AG	CG	TT	_	_	_	GT	_	_	_	_	CT	AA
12._RUQ_8	CC	AG	CG	TT	TT	CC	TT	GT	CC	CC	AA	GG	CT	AA
13._GC-04-29-2-11	GG	AG	CG	AA	AA	CC	AA	AA	_	_	AA	GG	AG	AA
14._RUQ_8	GG	AG	CG	AA	AA	CC	AA	AA	_	_	AA	GG	AG	AA
15._MITC-000647	GG	AG	CG	AA	AA	CC	AA	AA	_	_	AA	GG	AG	AA
16._IMC_11_Fld#_165_Plt#_2	GG	AG	CG	AA	AA	CC	AA	AA	_	_	AA	GG	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
1._GC-04-029-2-11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
2._GC-04-029-2-11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
3._GC-04-029-2-11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
4._IMC_11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
5._IMC_11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
6._IMC_11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
7._GC-04-029-2-11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
8._GC-04-029-2-11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	_
9._IMC_11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	_
10._IMC_11	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
11._RUQ_8	_	_	_	_	CC	CC	GG	_	CC	AA	GG	GG	CT	CC
12._RUQ_8	TT	AA	GG	CC	CC	CC	GG	AA	CC	AA	GG	GG	CT	CC
13._GC-04-29-2-11	AA	AA	GG	GG	GG	GG	CC	_	GG	AA	GG	CC	_	CC
14._RUQ_8	AA	AA	GG	GG	GG	GG	CC	_	GG	AA	GG	CC	_	CC
15._MITC-000647	AA	AA	GG	GG	GG	GG	CC	_	GG	AA	GG	CC	_	CC
16._IMC_11_Fld#_165_Plt#_2	AA	AA	GG	GG	GG	GG	CC	_	GG	AA	GG	CC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
1._GC-04-029-2-11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
2._GC-04-029-2-11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
3._GC-04-029-2-11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
4._IMC_11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
5._IMC_11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
6._IMC_11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
7._GC-04-029-2-11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
8._GC-04-029-2-11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
9._IMC_11	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
10._IMC_11	AA	GG	AA	TT	AG	CG	AC	CT	GT	AC	TT	GG	X_X	X_X
11._RUQ_8	AA	_	AA	TT	AG	CG	AC	CT	GT	AC	_	_	X_X	X_X
12._RUQ_8	AA	AG	AA	TT	AG	CG	AC	CT	GT	AC	TT	GG	X_X	X_X
13._GC-04-29-2-11	_	GG	AA	AA	AG	CG	AC	AG	AC	AC	TT	GG	X_X	X_X
14._RUQ_8	_	GG	AA	AA	AG	CG	AC	AG	AC	AC	TT	GG	X_X	X_X
15._MITC-000647	_	GG	AA	AA	AG	CG	AC	AG	AC	AC	TT	GG	X_X	X_X
16._IMC_11_Fld#_165_Plt#_2	_	GG	AA	AA	AG	CG	AC	AG	AC	AC	TT	GG	X_X	X_X

Input profile: IMC_11

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4211 6 > FP

Dapeng Zhang, 2016

1._IMC_11 GC-04-029-2-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._IMC_11 GC-04-029-2-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP3

3._IMC_11 GC-04-029-2-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._IMC_11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4211 1 > FP

Dapeng Zhang, 2016

5._IMC_11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4211 8

Dapeng Zhang, 2016

6._IMC_11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4211 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_11 GC-04-029-2-11

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._IMC_11 GC-04-029-2-11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

9._IMC_11

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4211 2 > FP

Dapeng Zhang, 2016

10._IMC_11

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F423 T1

Dapeng Zhang, 2016

11._IMC_11 RUQ_8

97.9 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._IMC_11 RUQ_8

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._IMC_11 GC-04-29-2-11

52.9 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 2, Rep: 11, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._IMC_11 RUQ_8

52.9 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._IMC_11 MITC-000647

52.9 %
35 shared markers

View View all Clone Any

USDA-SHRS, United States of America

16._IMC_11 IMC_11_Fld#_165_Plt#_2

52.9 %
35 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 165, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25